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- [[Category:Sednterp]][[Category:Introduction]] The purpose of Sednterp is to automatically preform calculations on data connected to ultracentrifu287 bytes (39 words) - 16:26, 23 December 2011
- [[Category:Sednterp]][[Category:Introduction]] ...g users to compile reports and make use of the data in programs other than Sednterp.2 KB (319 words) - 16:27, 23 December 2011
- [[Category:Sednterp]][[Category:Introduction]]553 bytes (69 words) - 00:39, 14 August 2012
- [[Category:Sednterp]][[Category:Sednterp Program Control and Screens]] ...rs from experimental information. The purpose of most of the [[forms]] in Sednterp is to allow the user to enter or to see information.1 KB (190 words) - 16:35, 23 December 2011
- [[Category:Sednterp]][[Category:Sednterp Program Control and Screens]] ...use of these defaults limit the accuracy of the calculations performed by Sednterp.2 KB (243 words) - 16:35, 23 December 2011
- [[Category:Sednterp]][[Category:Sednterp Web]] ...Web application is created using the same back end for calculations as the Sednterp v2.0 desktop application. The web page utilizes the same daemon, module fil662 bytes (101 words) - 15:58, 24 August 2012
- [[Category:Sednterp]][[Category:Sednterp Web]] ...nterp web, as well for security reasons. Instead then users can save their Sednterp web session to an xml file which they can then use load to for later use th616 bytes (106 words) - 15:58, 24 August 2012
- [[Category:Sednterp]][[Category:Sednterp Web]] On every tab of Sednterp web there are two buttons under the calculations right hand corner Called "3 KB (456 words) - 18:57, 23 August 2012
- [[Category:Sednterp]][[Category:Modules]] ...atform tools to help create the module in the form of developer tools. The Sednterp distribution comes with an example module which can be edited so users can14 KB (1,968 words) - 18:44, 4 September 2012
- [[Category:Sednterp]][[Category:Modules]]2 KB (193 words) - 20:09, 12 September 2012
- [[Category:Sednterp]][[Category:Modules]]639 bytes (82 words) - 20:04, 12 September 2012
Page text matches
- [[Category:Sednterp]] [[Category:Table of Contents]] ...dfdownload.png|link=http://bitcwiki.sr.unh.edu/index.php?title=Category:Sednterp&action=pdfbook]]4 KB (485 words) - 20:27, 23 August 2012
- [[Category:Sednterp]]'''I. Introduction.''' 1. [[General Information on Sednterp]].2 KB (278 words) - 20:59, 3 January 2012
- [[Category:Sednterp]][[Category:Introduction]] In this section of the help file, basic instructions for the use of Sednterp are given. It is assumed that the user reading these instructions is somew1 KB (150 words) - 16:26, 23 December 2011
- [[Category:Sednterp]][[Category:Introduction]] The purpose of Sednterp is to automatically preform calculations on data connected to ultracentrifu287 bytes (39 words) - 16:26, 23 December 2011
- [[Category:Sednterp]][[Category:Introduction]] Sednterp can compute the molecular weight from:282 bytes (37 words) - 16:26, 23 December 2011
- [[Category:Sednterp]] ...mpute the weight of a protein from its composition. To use this method in Sednterp, press the From Composition button (alt-c shortcut keystroke). The Sample1 KB (206 words) - 18:52, 22 December 2011
- [[Category:Sednterp]] ...dard tables of single component buffer data have been fit by polynomials. Sednterp computes density increments for each component at the user entered concentr4 KB (671 words) - 18:44, 22 December 2011
- [[Category:Sednterp]]The first step Sednterp uses to calculate the density of a buffer is to calculate the density of th ...rom the most parsimonious polynomial providing an adequate fit are used by Sednterp. Adequacy of the fits were judged by the following criteria: 1) the r.m.s.4 KB (708 words) - 19:14, 22 December 2011
- [[Category:Sednterp]]The sample composition form allows the user to enter the composition of a ...atibility with pre-release versions of Sednterp. With current versions of Sednterp it is not necessary to save composition data in such files, since the compo5 KB (781 words) - 19:13, 22 December 2011
- [[Category:Sednterp]][[Category:Sednterp Program Control and Screens]]2 KB (305 words) - 16:36, 23 December 2011
- [[Category:Sednterp]] ...tal information, but instead contains essential extrapolation data for the Sednterp program. Users can create their own experimental information databases in5 KB (784 words) - 20:59, 3 January 2012
- [[Category:Sednterp]]In this form, example, sample, buffer, or results information is saved as2 KB (299 words) - 19:13, 22 December 2011
- [[Category:Sednterp]] ...tal information, but instead contains essential extrapolation data for the Sednterp program. Users can create their own experimental information databases in5 KB (784 words) - 21:00, 3 January 2012
- [[Category:Sednterp]]108 bytes (14 words) - 18:45, 22 December 2011
- [[Category:Sednterp]]The partial specific volume is a measure of the change in the volume (in ...and the carboxy-terminal hydroxyl (and that is the implementation used in Sednterp).3 KB (458 words) - 19:10, 22 December 2011
- [[Category:Sednterp]][[Category:Introduction]] ...proteins from the composition of the protein and its ligands. Optionally, Sednterp will also compute the molecular weight from this also.1 KB (201 words) - 16:26, 23 December 2011
- [[Category:Sednterp]][[Category:Introduction]] ...density and viscosity data has not yet been fit to the polynomial function Sednterp uses to interpolate these values. With experimental measurements, new comp2 KB (280 words) - 16:26, 23 December 2011
- [[Category:Sednterp]][[Category:Introduction]] ...an average estimating formula worked out by Teller (Ref. [[28]] [[33]]). Sednterp automatically calculates the equivalent radius when [[Mr is computed]]. It2 KB (252 words) - 19:13, 3 January 2012
- [[Category:Sednterp]]Sednterp can compute the molecular weight from: Sednterp will let you [[enter a molecular weight]] yourself to use in latter computa256 bytes (35 words) - 19:12, 22 December 2011
- [[Category:Sednterp]] Given a certain temperature, rotor speed, and σ, Sednterp will use default approximate values of vbar and ρ automatically to compute2 KB (310 words) - 18:46, 22 December 2011
- [[Category:Sednterp]]The reduced apparent molecular weight, σ, is directly available from sedi814 bytes (108 words) - 19:10, 22 December 2011
- [[Category:Sednterp]]1 KB (220 words) - 18:59, 22 December 2011
- [[Category:Sednterp]]1 KB (220 words) - 18:46, 22 December 2011
- [[Category:Sednterp]][[Category:Introduction]]2 KB (386 words) - 16:29, 23 December 2011
- [[Category:Sednterp]] ...proteins from the composition of the protein and its ligands. Optionally, Sednterp will also compute the molecular weight from this also.1 KB (200 words) - 18:44, 22 December 2011
- [[Category:Sednterp]] ...density and viscosity data has not yet been fit to the polynomial function Sednterp uses to interpolate these values. With experimental measurements, new comp2 KB (278 words) - 18:56, 22 December 2011
- [[Category:Sednterp]] For those cases when the molecular weight of a sample is known, Sednterp allows the user to enter a molecular weight directly. Click on the Exact M329 bytes (55 words) - 18:46, 22 December 2011
- [[Category:Sednterp]][[Category:Theory of Computer Aided Interpretation of Sedimentation Data]] ...if some information is available about either hydration or asymmetry then Sednterp will use this to calculate better estimates of the other value. For instanc1 KB (155 words) - 16:32, 23 December 2011
- [[Category:Sednterp]] ...an average estimating formula worked out by Teller (Ref. [[28]] [[33]]). Sednterp automatically calculates the equivalent radius when [[Mr is computed]]. It2 KB (254 words) - 18:49, 22 December 2011
- [[Category:Sednterp]] ...if some information is available about either hydration or asymmetry then Sednterp will use this to calculate better estimates of the other value. For instanc990 bytes (146 words) - 18:45, 22 December 2011
- [[Category:Sednterp]]To interpolate a density or viscosity press the compute button on either t ...density and viscosity data has not yet been fit to the polynomial function Sednterp uses to interpolate these values. With experimental measurements, new comp2 KB (278 words) - 19:11, 22 December 2011
- [[Category:Sednterp]] ...ll as the protein's partial specific volume. Such data may be entered into Sednterp directly (and temperature corrections computed) or the program may use vari2 KB (250 words) - 19:04, 22 December 2011
- [[Category:Sednterp]][[Category:Introduction]] In the program Sednterp, interpretation refers to the computation of molecular structural propertie259 bytes (30 words) - 16:28, 23 December 2011
- [[Category:Sednterp]]611 bytes (94 words) - 19:03, 22 December 2011
- [[Category:Sednterp]][[Category:Introduction]] Results are molecular parameters computed by Sednterp from the equations described in the theory section. To understand the resu2 KB (248 words) - 16:29, 23 December 2011
- [[Category:Sednterp]] ...uses a power series approximation of standard tabular data. For example, Sednterp will interpolate the density of a solution from the concentration of solute444 bytes (61 words) - 20:47, 22 December 2011
- [[Category:Sednterp]][[Category:Introduction]] Sednterp will interpolate values for the following properties.725 bytes (83 words) - 16:29, 23 December 2011
- [[Category:Sednterp]] ...and the carboxy-terminal hydroxyl (and that is the implementation used in Sednterp).3 KB (460 words) - 20:46, 22 December 2011
- [[Category:Sednterp]][[Category:Introduction]] ...atibility with pre-release versions of Sednterp. With current versions of Sednterp it is not necessary to save composition data in such files, since the compo5 KB (783 words) - 16:28, 23 December 2011
- [[Category:Sednterp]] ...dard tables of single component buffer data have been fit by polynomials. Sednterp computes density increments for each component at the user entered concentr4 KB (668 words) - 20:45, 22 December 2011
- [[Category:Sednterp]] The first step Sednterp uses to calculate the density of a buffer is to calculate the density of th4 KB (713 words) - 20:46, 22 December 2011
- [[Category:Sednterp]] Sednterp can interpolate the viscosity of a buffer from viscosity table data in the2 KB (307 words) - 20:46, 22 December 2011
- [[Category:Sednterp]][[Category:Theory of Computer Aided Interpretation of Sedimentation Data]]2 KB (319 words) - 16:33, 23 December 2011
- [[Category:Sednterp]][[Category:Introduction]] ...ysical parameters of common buffers used in sedimentation experiments. The Sednterp program was developed at AMGEN by John Philo with the help of David Hayes a2 KB (229 words) - 16:27, 23 December 2011
- [[Category:Sednterp]][[Category:Introduction]] The Sednterp program helps to interpret σ's found by other programs (such as NONLIN). T777 bytes (118 words) - 16:28, 23 December 2011
- [[Category:Sednterp]][[Category:Introduction]] The Sednterp program requires the weight of the solute and s for various shape estimates594 bytes (90 words) - 16:28, 23 December 2011
- [[Category:Sednterp]][[Category:Introduction]]321 bytes (48 words) - 16:28, 23 December 2011
- [[Category:Sednterp]][[Category:Introduction]] ...p uses a power series approximation of standard tabular data. For example, Sednterp will interpolate the density of a solution from the concentration of solute465 bytes (63 words) - 16:28, 23 December 2011
- [[Category:Sednterp]][[Category:Introduction]] ...g users to compile reports and make use of the data in programs other than Sednterp.2 KB (319 words) - 16:27, 23 December 2011
- [[Category:Sednterp]][[Category:Introduction]]263 bytes (18 words) - 16:27, 23 December 2011
- [[Category:Sednterp]][[Category:Introduction]]462 bytes (70 words) - 16:27, 23 December 2011
- [[Category:Sednterp]][[Category:Theory of Computer Aided Interpretation of Sedimentation Data]] ...ll as the protein's partial specific volume. Such data may be entered into Sednterp directly (and temperature corrections computed) or the program may use vari2 KB (259 words) - 16:30, 23 December 2011
- [[Category:Sednterp]]409 bytes (66 words) - 18:50, 22 December 2011
- [[Category:Sednterp]][[Category:Introduction]]214 bytes (35 words) - 16:27, 23 December 2011
- [[Category:Sednterp]][[Category:Introduction]]535 bytes (80 words) - 16:28, 23 December 2011
- [[Category:Sednterp]][[Category:Introduction]]232 bytes (28 words) - 16:28, 23 December 2011
- [[Category:Sednterp]][[Category:Introduction]]932 bytes (115 words) - 16:29, 23 December 2011
- [[Category:Sednterp]]809 bytes (107 words) - 20:52, 22 December 2011
- [[Category:Sednterp]] ...omatic defaults, a quick answer is obtained by entering sigma and RPM. If Sednterp does not have enough information to compute the molecular weight, a stop si2 KB (309 words) - 20:53, 22 December 2011
- [[Category:Sednterp]] ...atibility with pre-release versions of Sednterp. With current versions of Sednterp it is not necessary to save composition data in such files, since the compo5 KB (781 words) - 18:50, 22 December 2011
- [[Category:Sednterp]][[Category:Sednterp Program Control and Screens]] ...tal information, but instead contains essential extrapolation data for the Sednterp program. Users can create their own experimental information databases in5 KB (790 words) - 21:00, 3 January 2012
- [[Category:Sednterp]]The apparent sedimentation coefficient is determined directly from the dat2 KB (298 words) - 19:13, 22 December 2011
- [[Category:Sednterp]] ...8]] [[29]] [[30]] [[31]] [[32]]) from the analytical ultracentrifuge. The Sednterp program assumes that only sedimentation data are available, and methods tha4 KB (578 words) - 18:58, 22 December 2011
- [[Category:Sednterp]]Sednterp will calculate the buoyant molecular weight of the sample according to the649 bytes (95 words) - 19:08, 22 December 2011
- [[Category:Sednterp]] Sednterp can use various methods to calculate molecular weight.3 KB (567 words) - 18:58, 22 December 2011
- [[Category:Sednterp]] ...l in comparing the sedimentation behavior of different proteins. Moreover Sednterp must use s20w in calculating the limits of hydration and estimating the asy4 KB (577 words) - 18:50, 22 December 2011
- [[Category:Sednterp]][[Category:Sednterp Program Control and Screens]] The choice of vbar used by Sednterp in its calculations is indicated by the one green underlined button.1 KB (234 words) - 16:36, 23 December 2011
- [[Category:Sednterp]] ...and the carboxy-terminal hydroxyl (and that is the implementation used in Sednterp).3 KB (467 words) - 18:58, 22 December 2011
- [[Category:Sednterp]][[Category:Sednterp Program Control and Screens]] ...dard tables of single component buffer data have been fit by polynomials. Sednterp computes density increments for each component at the user entered concentr4 KB (674 words) - 16:37, 23 December 2011
- [[Category:Sednterp]]2 KB (302 words) - 20:52, 22 December 2011
- [[Category:Sednterp]][[Category:Theory of Computer Aided Interpretation of Sedimentation Data]] ...l in comparing the sedimentation behavior of different proteins. Moreover Sednterp must use s20w in calculating the limits of hydration and estimating the asy4 KB (586 words) - 15:50, 24 April 2012
- [[Category:Sednterp]] Sednterp can use various methods to calculate molecular weight.3 KB (567 words) - 20:51, 22 December 2011
- [[Category:Sednterp]]571 bytes (91 words) - 18:49, 22 December 2011
- [[Category:Sednterp]]117 bytes (19 words) - 20:51, 22 December 2011
- [[Category:Sednterp]]307 bytes (47 words) - 20:53, 22 December 2011
- [[Category:Sednterp]]119 bytes (21 words) - 20:52, 22 December 2011
- [[Category:Sednterp]][[Category:Theory of Computer Aided Interpretation of Sedimentation Data]]2 KB (239 words) - 16:33, 23 December 2011
- [[Category:Sednterp]] The results form lists results of Sednterp calculations. To understand the results, read the [[theory section]] of th1 KB (181 words) - 20:53, 22 December 2011
- [[Category:Sednterp]]2 KB (299 words) - 19:02, 22 December 2011
- [[Category:Sednterp]][[Category:Introduction]] Sednterp will draw the following graphs:370 bytes (56 words) - 16:29, 23 December 2011
- [[Category:Sednterp]][[Category:Sednterp Program Control and Screens]] Various graphs are available from the results and composition forms in Sednterp. All of these graphs use a standard form with many options for formatting2 KB (405 words) - 16:37, 23 December 2011
- [[Category:Sednterp]]397 bytes (59 words) - 19:03, 22 December 2011
- [[Category:Sednterp]]1 KB (195 words) - 18:52, 22 December 2011
- [[Category:Sednterp]] The results form lists results of Sednterp calculations. To understand the results, read the [[theory section]] of th1 KB (181 words) - 18:50, 22 December 2011
- [[Category:Sednterp]][[Category:Introduction]]553 bytes (69 words) - 00:39, 14 August 2012
- [[Category:Sednterp]][[Category:Introduction]]465 bytes (62 words) - 16:30, 23 December 2011
- [[Category:Sednterp]]192 bytes (30 words) - 18:44, 22 December 2011
- [[Category:Sednterp]][[Category:Introduction]]923 bytes (145 words) - 16:30, 23 December 2011
- [[Category:Sednterp]][[Category:Theory of Computer Aided Interpretation of Sedimentation Data]] ...ground useful to understand Sednterp. In a few cases the formulae used in Sednterp differ from those in Ref. [[59]] (mostly due to correction of typographical1,008 bytes (147 words) - 16:30, 23 December 2011
- [[Category:Sednterp]][[Category:Theory of Computer Aided Interpretation of Sedimentation Data]]2 KB (229 words) - 16:31, 23 December 2011
- [[Category:Sednterp]][[Category:Theory of Computer Aided Interpretation of Sedimentation Data]]2 KB (311 words) - 16:31, 23 December 2011
- [[Category:Sednterp]][[Category:Theory of Computer Aided Interpretation of Sedimentation Data]]883 bytes (116 words) - 16:31, 23 December 2011
- [[Category:Sednterp]][[Category:Theory of Computer Aided Interpretation of Sedimentation Data]] ...in's hydration and asymmetry. While none of the calculations is difficult, Sednterp assembles all of them into one program to facilitate data interpretation. T1 KB (191 words) - 16:31, 23 December 2011
- [[Category:Sednterp]]2 KB (302 words) - 18:59, 22 December 2011
- [[Category:Sednterp]][[Category:Theory of Computer Aided Interpretation of Sedimentation Data]] ...histicated algorithms. Users who often use an algorithm not implemented in Sednterp should [[contact]] the programmers; portions of the source code are availab4 KB (548 words) - 16:31, 23 December 2011
- [[Category:Sednterp]]The first step Sednterp uses to calculate the density of a buffer is to calculate the density of th ...rom the most parsimonious polynomial providing an adequate fit are used by Sednterp. Adequacy of the fits were judged by the following criteria: 1) the r.m.s.4 KB (713 words) - 19:10, 22 December 2011
- [[Category:Sednterp]]For general questions regarding interpretation of sedimentation data and t439 bytes (60 words) - 19:09, 22 December 2011
- [[Category:Sednterp]][[Category:Theory of Computer Aided Interpretation of Sedimentation Data]] Sednterp can use various methods to calculate molecular weight.4 KB (576 words) - 16:31, 23 December 2011
- [[Category:Sednterp]][[Category:Theory of Computer Aided Interpretation of Sedimentation Data]] Sednterp will calculate the buoyant molecular weight of the sample according to the724 bytes (104 words) - 16:31, 23 December 2011
- [[Category:Sednterp]][[Category:Theory of Computer Aided Interpretation of Sedimentation Data]] ...and the carboxy-terminal hydroxyl (and that is the implementation used in Sednterp).3 KB (469 words) - 16:32, 23 December 2011